Interesting Ecological Network Databases:
Interaction Web Database : Great collection of Bipartite networks (mutualistic, hervibore-plant,host-parasite,…..) all in plain matrix format, including species name.
Pajek FoodWeb Dataset: A collection of foodwebs in .net (pajek) format , including species name. Not too new, but still useful.
Coral Reefs : Highly detailed foodwebs of three different coral reefs.
Web of Life: Collection of different ecological networks (mainly pollination and seed-dispersal) maintained by the bascompte lab.
Ecological Data Wiki : The Data Wiki helps scientists collaborate on gathering information about data and how to use it.
KONECT Dataset: Large network datasets of all types … have fun.
Gephi: A multiplatform program for network representation and analysis.
NetworkX: Python library for working with complex networks.
sorry… downloas are not ready yet